FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n01_43.35100000073c47.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n01_43.35100000073c47.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41678225
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG253500.020.8217121
CTATACT347100.020.4005974
TATACTG272200.019.749985
CCTATAC256000.019.0158733
TAATACT377850.018.049074
TATAGGG246050.016.9282952
TTATACT359850.016.2199764
TATACTA484950.016.1582895
GTATTAT331450.016.0682281
TATACAG262500.015.9568685
ATAATAC325700.015.9526163
CCCTATA248700.015.8885622
ACTGTGC194350.015.5669278
TACACTG201100.015.4681235
TAGACTG146400.015.2463255
ATTATAC320300.015.2429323
TATACCG133000.014.8542285
GTATATA639350.014.8395171
GTATTAG213300.014.8341871
GTATAAG202200.014.6851791
Produced by FastQC (version 0.11.2)