FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n01_217.35100000073a05.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n01_217.35100000073a05.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54162755
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT368900.018.4096744
TATACTG335100.017.6301615
GTATAGG272750.017.1737541
CCTATAC275700.016.6231783
TTATACT418150.015.5826294
TAATACT418200.015.5580534
TATACCG180050.015.5093815
ACTGTGC240200.014.9683968
TATACAG308000.014.8640325
GTATTAT380500.014.8075461
GTATATA712550.014.76765251
TATACTA514550.014.7027485
TAGACTG178500.014.5266245
ATTATAC382250.014.4620223
TACACTG245100.014.1058225
TCTATAC274350.013.9698623
ATAATAC383900.013.9297653
ACTATAC282450.013.8214553
GTATTAG249300.013.7774571
GTATAAG239250.013.6810791
Produced by FastQC (version 0.11.2)