FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n02_209.35200000073b01.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n02_209.35200000073b01.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35471847
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG229950.022.5135231
CTATACT313100.020.856784
TATACTG222450.020.4241755
CCTATAC244300.020.3107573
TATAGGG220300.017.7380662
GTATTAT285000.016.9805561
TATACTA422400.016.8766565
TTATACT298550.016.8745574
TAATACT305050.016.8265974
GTATTAG166500.016.67431
TAGACTG123550.016.3095575
TATACCG117600.016.1244415
CCCTATA239500.015.9587742
TATACAG211750.015.8677395
ATTATAC271750.015.8630553
GTATATA517300.015.63186551
ATAATAC275550.015.368323
GTATAAT289600.015.3647781
ATACTGT232900.015.3391776
ACTGTGC165450.015.2174758
Produced by FastQC (version 0.11.2)