FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n02_207.35200000073a89.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n02_207.35200000073a89.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86794020
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG579050.018.4840095
CTATACT588650.017.449074
GTATAGG417050.016.63231
TTATACT733600.016.379194
TAATACT732350.016.3357544
GTATTAT691450.015.9106431
TATACAG534750.015.4647295
TATACCG287150.015.4590185
CCTATAC423600.015.4510563
GTATATA1300400.015.1944061
ACTGTGC382150.014.9921548
ATAATAC666200.014.9471893
GTATAAT671550.014.8387751
TCTATAC472300.014.7434753
GTATAAG413100.014.7427681
GTATTAG434250.014.6268821
GTATAGA486550.014.4519291
ATTATAC672500.014.30534653
TAGACTG302150.013.9994595
GTATTGG574200.013.7693741
Produced by FastQC (version 0.11.2)