FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n02_206.35200000073a1f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n02_206.35200000073a1f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17152924
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG119900.019.1852535
TTATACT167000.017.5604924
TAATACT171950.017.1931784
GTATTAT152650.017.0049481
GTATAGA108800.016.9543951
TAGACTG57650.016.158395
CTATACT127100.016.1175754
GTATTAG96550.016.1018181
TATACAG111500.015.9418285
ATACTGT125900.015.9241316
GTATAAT155200.015.7759291
TACACTG84800.015.6929115
ATAATAC155300.015.3948193
ATTATAC143100.015.31226353
GTATAAG94700.015.0106921
GTATATA305150.014.9411741
TATACCG55250.014.7957675
GTATAGT105300.014.5832251
ACTGTGC82550.014.559658
CTACACT83600.014.4977914
Produced by FastQC (version 0.11.2)