FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n02_205.352000000739cd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n02_205.352000000739cd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18174074
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG129500.022.092915
TTATACT179900.018.7313394
CTATACT139900.018.3794824
TATACAG115900.017.8784245
TAATACT184950.017.8601134
GTATTAT158600.017.5046861
ATACTGT125450.017.1928866
TAGACTG61950.016.9541955
ACTGTGC87400.016.6321098
GTATAAG93250.016.5683461
GTATAAT162350.016.5147291
CCTATAC88000.016.473253
GTATTAC99500.016.3876111
GTATTAG101650.016.274831
ATTATAC155500.016.2302883
GTATTGG148950.016.1493361
TATACCG63450.016.0290725
GTATAGG91350.015.9762351
GTATATA315750.015.9289411
GTATAGA111550.015.6827731
Produced by FastQC (version 0.11.2)