FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n01_206.35100000073a12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n01_206.35100000073a12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17152924
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG119350.020.7719735
TATACAG111450.018.6648145
TTATACT172850.017.2003944
CTATACT128650.016.9817124
TAATACT177200.016.9657654
TACACTG85100.016.6867315
ACTGTGC80500.016.5194028
ATAATAC150000.015.8311863
GTATTAT155800.015.6101871
TCTATAC99900.015.5934813
ATACTGT123700.015.58774956
GTATAAT153850.015.0670391
TATACCG56450.014.8915175
TACTGTG89700.014.8780517
ATTATAC151050.014.8721963
GTATAAG88600.014.7972481
TTACACT99100.014.760824
TATACTT178400.014.7483885
GTATAGA111050.014.7144991
CCTATAC80700.014.5364433
Produced by FastQC (version 0.11.2)