FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l06n01_205.351000000739c0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l06n01_205.351000000739c0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18174074
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG131800.022.557785
TATACAG126350.019.5087555
TAATACT183200.019.1583274
TATACCG59400.019.109485
TTATACT185400.018.8285224
CTATACT137500.018.7212644
TAGACTG65050.018.0337925
ACTGTGC86300.017.720968
ATTATAC157700.017.4679093
ATACTGT130650.017.3761946
TACACTG91250.017.2799555
ATAATAC162500.017.2734343
CTGTGCG47750.016.61069
CCTATAC87650.016.2560083
GTATAGG89150.015.9311891
TCTATAC109050.015.8533223
GTAATAC93300.015.6279243
TAGACAG67050.015.5125335
GTATAAG94150.015.28694251
GTATTAC98250.015.2775191
Produced by FastQC (version 0.11.2)