FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n02_200.35200000073b52.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n02_200.35200000073b52.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108497452
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG599950.021.9897161
CTATACT783600.019.7180564
CCTATAC634950.019.1854463
TATACTG624750.016.9147325
TATAGGG591400.016.538832
CCCTATA606000.016.463652
TATACTA1086300.015.7881385
TATACCG327200.015.1701035
GTATATA1394250.014.8393721
GTATTGG681750.014.725471
TAGACTG369800.014.5077185
TATACAG604600.014.2624895
TACACTG495850.013.98951155
TAATACT819550.013.8687554
GTATAGA548350.013.7330381
GTATTAT752700.013.7119771
ACTGTGC477450.013.4000858
GTATTAG486900.013.3464991
GTATAAT759150.013.15488151
TTATACT820400.013.1380824
Produced by FastQC (version 0.11.2)