FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n01_202.35100000073c3a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n01_202.35100000073c3a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33713427
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT250250.022.0342314
CCTATAC206650.021.248363
GTATAGG180900.020.3160251
TATACTG198850.018.8630375
TATACTA343250.017.2745115
CCCTATA198100.017.2398172
TATAGGG180500.016.4994032
TACACTG154200.015.6945385
TAGACTG113350.015.6682965
GTATATA410150.015.3308431
TTATACT247700.015.0185274
TATACAG193700.014.7434695
TAGACAG112250.014.6826665
ACTGTGC151600.014.6202518
TATACCG106500.014.5860015
TCTATAC165500.014.4633873
TAATACT249750.014.1016524
CTACACT154850.014.0795364
TACACCG107000.013.8539165
ATACTAA270800.013.7809736
Produced by FastQC (version 0.11.2)