FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n01_201.35100000073bce.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n01_201.35100000073bce.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40892911
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG249850.017.8736425
CTATACT252550.015.8894894
GTATTGG378450.015.6664621
TATACAG229700.015.4419285
TAGACTG132200.015.403445
TAATACT319450.014.7617954
GTATATA518450.014.7370591
TTATACT301950.014.4704934
TCTATAC201850.014.4311973
TACACTG186850.014.3451155
GTATAGG158000.014.3137141
TGCGTTC277750.013.9639039
GTATAAG179650.013.7795651
CCTATAC169350.013.7725813
TATTGGG406150.013.6420362
ATAATAC297000.013.4086593
TATACCG121150.013.3685225
ACTGTGC175250.013.3488488
GTATTAG182650.013.3022511
ATTATAC283150.013.1113083
Produced by FastQC (version 0.11.2)