FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n01_199.35100000073af6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n01_199.35100000073af6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21683203
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG139300.019.4147115
CTATACT147650.016.6996544
TATACAG133300.016.4511685
TTATACT186700.016.1416074
TAATACT188450.016.1263224
ACTGTGC96050.015.5331718
CCTATAC96000.015.2205823
TACACTG102150.015.0692245
GTATAGG90500.014.5226531
ATAATAC173650.014.4916173
GTATAAG97750.014.2242221
TATACCG63900.014.0089925
GTATATA308800.013.9516361
ATTATAC167900.013.8396393
ATACTGT144650.013.8175786
GTATTAG103600.013.6659311
GTATAGA120800.013.6104611
TCTATAC115200.013.5205973
TAGACTG73750.013.4866225
TATACTA220300.013.2652855
Produced by FastQC (version 0.11.2)