FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n01_198.35100000073a99.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n01_198.35100000073a99.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35370722
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG224150.018.5074985
TATACAG202650.016.2880295
CTATACT223250.016.1014614
TATACCG111950.015.6939465
GTATTGG269350.014.8612731
CCTATAC150750.014.793613
ACTGTGC152050.014.5135788
TACACCG111100.014.4500065
TACACTG158200.014.3986235
GTATAGG147200.014.2886991
TCTATAC182800.014.1496233
GTATATA494050.013.9778131
TAATACT288450.013.9093794
TTATACT281400.013.8055114
TAGACTG117250.013.6112955
GTATTAT258650.013.2511331
ATTATAC249750.013.2311183
TAGACAG118100.013.1524395
GTATAGA188750.013.1399131
GTATTAG169650.013.0882941
Produced by FastQC (version 0.11.2)