FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l05n01_195.351000000739dd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l05n01_195.351000000739dd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30256960
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG206700.016.906925
CTATACT196200.016.2517344
TAATACT245400.016.1742344
TTATACT250400.015.4437784
TATACAG182450.015.3128745
ATAATAC227100.014.4899173
GTATTAT228050.014.3430581
GTATAAG138600.014.2114341
ACTGTGC131300.014.1012318
TAGACAG101700.014.0615955
TAGACTG100750.013.9591835
GTATATA445800.013.644261
ATTATAC232350.013.5916213
TCTATAC165200.013.58832553
GTATTAG148050.013.545591
TTACACT152950.013.3756094
GTATTAA206300.013.3322471
CCTATAC139750.013.3249133
TATACTA298250.013.2572855
TACACTG144050.013.1490785
Produced by FastQC (version 0.11.2)