FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l04n02_189.35200000073b88.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l04n02_189.35200000073b88.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55897572
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT366650.018.0094184
GTATAGG279750.017.6261161
CCTATAC297050.016.8040353
TATACTG320950.016.55825
CGCCGTA270850.014.43365594-95
ACTGTGC244650.014.4270868
TATACTA518200.014.3098775
GTATATA733100.014.2045941
TAATACT418200.014.1980134
TACACTG252900.014.096825
TATACCG167050.014.0853435
GTATTGG342100.014.0383581
TAGACTG188550.013.8405885
GTATTAG245850.013.7514131
GTATTAT374450.013.7144351
CCCTATA272400.013.6679262
GTATAAG242500.013.6276521
GTATAGA282050.013.4025971
TATACAG306700.013.3908665
TTATACT418000.013.2835984
Produced by FastQC (version 0.11.2)