FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l04n01_194.35100000073cda.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l04n01_194.35100000073cda.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45179756
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT209450.016.8037174
GTATTGG384650.016.1801191
TTCTGCT847850.015.43401594-95
GTATAGG164850.015.2167211
TATACTG233750.015.1989495
CTTCTGC982850.015.05866894-95
TATTGGG393550.014.5552022
TCTGCTT684950.014.41690394-95
TATACAG217950.014.3612475
GTATATA397650.014.2771991
TATACCG120850.014.22745
TAATACT233300.014.0068724
TGCGTTC286200.014.0067979
GTATTAT231450.013.9170951
CCTATAC173900.013.7384983
GTATAAG157350.013.5567531
TTATACT249250.013.5107214
TAGACAG132000.013.4933875
TATACTA262350.013.2704775
TACACTG195150.013.1671675
Produced by FastQC (version 0.11.2)