FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l04n01_187.35100000073b11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l04n01_187.35100000073b11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18852158
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG108050.020.8419511
TATACTG119900.020.5594225
CTATACT147300.019.6697584
TATACCG58250.018.1832565
CCTATAC114550.017.995993
TTATACT163850.017.7989274
TAGACTG62800.017.2439965
TAATACT162150.017.077474
TATACAG114300.016.0815325
GTATTAT148350.016.01281
ACTGTGC88650.015.9661518
ATACTGT124750.015.9526026
TATACTA214800.015.7658715
GTATTAC92850.015.7599071
GTATTAG86350.015.4056661
GTATTGG112400.015.3012561
GTATAAT151350.015.287321
ATAATAC146750.015.2772443
TATAGGG108150.015.152132
GTATAAG91650.015.0851
Produced by FastQC (version 0.11.2)