FastQCFastQC Report
Tue 20 Sep 2016
C99E8ACXX_l08n01_54.35100000067e56.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC99E8ACXX_l08n01_54.35100000067e56.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22097550
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG149750.022.6192471
CTATACT189700.021.830424
CCTATAC157550.020.9497743
TATACTG142050.019.9910475
TATAGGG141150.019.1782022
TAATACT177500.018.9429594
TTATACT186400.018.49714
TATACCG74800.018.156835
GTATTAT163000.017.8951871
TATACAG138750.017.4547165
GTATAAT167200.017.019471
TATACTA251800.017.0108665
TAGACTG79700.016.9809555
ATAATAC160300.016.7389373
ATTATAC169600.016.6891173
CCCTATA148400.016.6411512
TATACTC157200.016.161325
GTATAAG106400.016.1183661
TCTATAC118650.015.9704853
GTATTGG135850.015.63159751
Produced by FastQC (version 0.11.2)