FastQCFastQC Report
Tue 20 Sep 2016
C99E8ACXX_l06n02_24.35200000067e96.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC99E8ACXX_l06n02_24.35200000067e96.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28044336
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG157350.021.1554161
CTATACT203550.020.2263494
CCTATAC163150.018.5696243
TATACTG158700.017.9245415
TAATACT203500.016.3577334
TATAGGG154000.016.0963672
TATACTA266350.015.9576345
GTATTAT188750.015.7491691
ATAATAC182850.015.5301533
GTATTAG122200.015.5050081
GTATATA350100.015.4490541
TTATACT207300.015.4393894
TATACAG163950.015.3519165
TACACTG131600.015.0479855
GTATAAG123350.014.9369821
TCTATAC132800.014.9110263
TATACCG88350.014.5666915
GTATAAT192400.014.487831
TAGACTG93600.014.2062795
CCCTATA159600.014.1926512
Produced by FastQC (version 0.11.2)