C99E8ACXX_l04n01_total_ctrl_1h_rep2_root.35100000067da7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C99E8ACXX_l04n01_total_ctrl_1h_rep2_root.35100000067da7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70232487
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATGTTAGTTGTTTCAGTAATGCTAAAAAGGCAAGAAGACTGTAGTGAAGT	313858	0.44688435994015135	No Hit
CATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAG	294352	0.4191108880994062	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATG	230200	0.3277685439218463	TruSeq Adapter, Index 4 (100% over 49bp)
CAAGCTTTTCTCTCTCTCTCTCTCTTTGCACTACATTCTTGAATTCACAA	154641	0.2201844283258829	No Hit
ATCAGCTTTACAGTTGTATTAAAAGGATACCTATAACTCAAACTTGAGTT	153648	0.21877055272156318	No Hit
CAAGACATACTTCTCTGGATCCATCTCTGTTCAATAGTGATTCATTCTCC	99135	0.14115262641916695	No Hit
GTAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACA	90720	0.1291709917662463	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTAGTT	64100	50.352425	3
TAGTTGT	65155	49.92888	5
TTAGTTG	70675	45.84174	4
TGTTAGT	71410	45.238087	2
ATGTTAG	72825	43.964058	1
CGTATAC	18400	39.257298	5
TGTTTCA	84610	38.43618	9
CATGCAT	87255	35.71331	1
GCATTGG	88355	35.58296	4
GTCGTAT	20240	35.408195	3
AGTTGTT	92825	35.392704	6
TTGTTTC	93305	35.29209	8
TTACAGT	45345	35.000603	8
ATGCATT	92350	34.070274	2
GACATAC	31995	33.63512	4
TACAGTT	47870	32.93615	9
TGCATTG	96000	32.54226	3
GTTGTTT	102055	32.168495	7
CATTGGA	97850	31.979204	5
TCGTATA	22460	31.90764	4