C99B1ACXX_l08n01_nutrinetat_vegc66_shahdara_r2o_hn.35100000089efe.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C99B1ACXX_l08n01_nutrinetat_vegc66_shahdara_r2o_hn.35100000089efe.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17709914
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGGCGATCTCGTATGCC	284778	1.6080145843734757	TruSeq Adapter, Index 7 (97% over 36bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAG	55532	0.31356448145372134	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTA	32724	0.18477785945205605	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	31345	42.49027	45
CCAGGCG	31345	42.44387	33
GCACACG	32015	42.342487	11
CAGGCGA	31435	42.21489	34
ACGTCTG	32065	42.178238	15
CGTATGC	31920	41.714417	44
AGGCGAT	31860	41.66588	35
ACCAGGC	32220	41.35233	32
CACACGT	32810	41.31651	12
ACACGTC	32790	41.293686	13
AGCACAC	32965	41.15636	10
TCGTATG	32440	41.07349	43
GGCGATC	32425	40.849667	36
CTCGTAT	32785	40.648132	42
GAGCACA	33520	40.548744	9
CGTCTGA	33760	40.067245	16
CACGTCT	33805	40.040527	14
GCGATCT	33495	39.60517	37
TCGGAAG	34695	39.166664	3
CAGTCAC	34235	39.101933	27