C99B1ACXX_l02n01_nutrinetat_vegc29_shahdara_r2y_ln.35100000089e1a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C99B1ACXX_l02n01_nutrinetat_vegc29_shahdara_r2y_ln.35100000089e1a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24067307
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGGCGATCTCGTATGCC	894769	3.7177778136955664	TruSeq Adapter, Index 7 (97% over 36bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26899	0.1117657243496333	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	98680	43.712284	45
GCACACG	104560	43.590202	11
CCAGGCG	98420	43.570286	33
ACGTCTG	104465	43.5631	15
CAGGCGA	97795	43.500828	34
CACACGT	104915	43.41698	12
AGCACAC	105335	43.26308	10
ACACGTC	105555	43.151604	13
CGTATGC	100090	43.08088	44
ACCAGGC	100320	42.951206	32
AGGCGAT	99130	42.90592	35
CACGTCT	106170	42.874107	14
GGCGATC	99105	42.839584	36
GAGCACA	106595	42.80022	9
TCGTATG	100900	42.768475	43
CTCGTAT	101425	42.575924	42
TCGGAAG	106650	42.569122	3
CGTCTGA	107320	42.39792	16
CAGTCAC	103865	42.200005	27
AGAGCAC	108120	42.190296	8