FastQCFastQC Report
Tue 25 Oct 2016
C98UFACXX_l06n02_110.3520000006b189.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l06n02_110.3520000006b189.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41522028
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG302150.020.291075
TAATACT396650.018.7884794
TTATACT383700.018.5183544
CTATACT295400.018.1167764
TATACCG133300.017.1138975
GTATTAT353600.016.929331
TAGACTG146600.016.8904675
GTATAAG208100.016.839211
TATACAG258050.016.5022075
TAGACAG145900.016.3200055
ACTGTGC200300.016.0538718
GTATAAT350450.015.819721
ATTATAC333550.015.7886283
TACACTG209850.015.7403255
ATAATAC340200.015.64765553
GTATAGG203650.015.432751
TAGGACT184200.015.404154
GTATTGG290250.015.2675711
CCTATAC200550.015.1915093
GTATTAG224950.015.1128481
Produced by FastQC (version 0.11.2)