FastQCFastQC Report
Tue 25 Oct 2016
C98UFACXX_l06n01_110.3510000006b18c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l06n01_110.3510000006b18c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41522028
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG292700.020.0085645
CTATACT302150.018.9430754
TAATACT389000.018.621144
TTATACT392050.018.161274
TATACAG269350.016.964215
ACTGTGC191350.016.6310168
ATAATAC343900.016.408813
TCTATAC241700.016.3901233
GTATAGG202050.016.3231411
TAGACTG142450.016.104985
GTATTAT358900.015.9822141
TATACCG131450.015.8266535
TACACTG209400.015.8099925
GTATAGA252200.015.6776641
ATTATAC342550.015.6276173
CTACACT207350.015.4856234
CCTATAC202450.015.4383513
GTATTAG222550.015.2893341
GTATAAT352550.015.2590961
GTATAAG202300.015.1988761
Produced by FastQC (version 0.11.2)