FastQCFastQC Report
Tue 25 Oct 2016
C98UFACXX_l06n01_109.3510000006b112.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l06n01_109.3510000006b112.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40322377
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG279300.019.8290865
TAATACT420000.017.2579634
CTATACT305450.017.2143944
TTATACT407100.016.8130744
TACACTG191850.016.3154355
ACTGTGC177600.015.9662428
GTATAGG189750.015.35257151
ATACTGT287350.014.9757416
TAGACTG130100.014.96861655
TATACAG249700.014.8942395
TATACCG128400.014.7598865
TAGGACT165750.014.7296994
CTACACT186850.014.6170254
TAGACAG135750.014.3106245
TTACACT231200.014.2168224
ATTATAC357850.014.1364863
CTGTGCA242550.014.1190459
GTATTAT370200.014.0180851
TATACTT425800.013.93259055
GTATAAT363000.013.8510111
Produced by FastQC (version 0.11.2)