FastQCFastQC Report
Mon 24 Oct 2016
C98UFACXX_l04n01_146.3510000006b08d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l04n01_146.3510000006b08d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36540159
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG205900.020.8187541
TATACTG224100.020.7715455
CTATACT286900.020.1823644
CCTATAC219400.018.7708153
TAGACTG125600.018.7575725
ACTGTGC162900.017.9030068
TACACTG170300.017.7110255
CTACACT167750.016.791564
TATACCG117400.016.5882425
TTATACT305600.015.9785984
TACACCG117500.015.9273285
TATACAG215600.015.840355
ATACTGT239650.015.6180746
TAATACT315350.015.5448234
GTATTGG226650.015.4111881
GTGTAGG148700.015.4042511
TCTATAC190750.015.3147963
TAGACAG117600.015.2675415
GTATTAG174050.015.0719551
TACACAG158550.014.9791925
Produced by FastQC (version 0.11.2)