FastQCFastQC Report
Mon 24 Oct 2016
C98UFACXX_l03n02_123.3520000006b245.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l03n02_123.3520000006b245.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47436536
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG289900.020.024665
CTATACT402950.019.6647914
GTATAGG262650.019.4342521
CCTATAC293900.019.251193
TACACTG213950.017.9185735
TAGACTG152800.017.0994265
ACTGTGC203700.016.602558
GTATTGG352700.016.4801791
CTACACT214800.016.3880924
CCCTATA292750.015.5669992
TACACAG204050.014.9232575
ATACTGT298500.014.91107756
GTCTAGG128050.014.8835221
TTATACT465300.014.6712864
TAGACAG149250.014.60967355
TAGGACT187450.014.5215724
TACACCG137500.014.4070665
TTACACT260550.014.3309824
CTACACC231450.014.3265864
CCAGGAC169100.014.29945853
Produced by FastQC (version 0.11.2)