FastQCFastQC Report
Mon 24 Oct 2016
C98UFACXX_l03n01_123.3510000006b248.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l03n01_123.3510000006b248.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47436536
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG256300.020.5305541
CTATACT381750.019.9773624
CCTATAC274000.019.5450863
TATACTG294800.019.1396355
TAGACTG150050.018.4243245
TACACTG213450.017.0407285
GTATTGG337850.016.172661
ACTGTGC205300.016.1546048
CTACACT215650.016.0960564
TAGACAG154850.015.6901085
TTATACT445300.015.4892614
TATAGGG251650.015.33122352
TTACACT248250.014.8858774
GTGTAGG179500.014.8760941
TCTATAC268650.014.8620243
ATACTGT308550.014.7394556
ACAGTGC229350.014.7280158
GTCTAGG127200.014.5977971
TAGGACT183550.014.450574
CCCTATA275400.014.2941572
Produced by FastQC (version 0.11.2)