FastQCFastQC Report
Mon 24 Oct 2016
C98UFACXX_l02n01_90.3510000006b17f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l02n01_90.3510000006b17f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32973939
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG173400.018.5780141
CTATACT219900.018.4234054
CCTATAC180000.016.9667913
TATACTG185450.016.9284865
TAGACTG107550.016.5159915
ACTGTGC144150.016.012728
TATACAG174400.014.89650255
TACACTG156200.014.8686425
TAATACT233650.014.6560044
TATACTA293650.014.2329895
TACACCG106800.014.2305665
TTATACT233600.014.2118444
CTACACT147850.013.8452894
TCTATAC154350.013.6935053
GTATTGG191400.013.6533571
CCCTATA166950.013.5419682
CCTACAC130700.013.4821623
TATACCG98050.013.4176245
TATAGGG167050.013.3916982
GTATATA402300.013.1687181
Produced by FastQC (version 0.11.2)