FastQCFastQC Report
Mon 24 Oct 2016
C98UFACXX_l01n01_61.3510000006b09a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC98UFACXX_l01n01_61.3510000006b09a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5016259
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT47850.022.2334654
CCTATAC36250.021.0946313
GTATAGG32250.020.9209611
TACACTG25050.020.8534765
CTACACT23150.020.7210374
TAGACTG16800.019.7871045
TATACTG29700.019.5072885
TACACCG15000.019.3122145
TAGACAG17700.018.780985
CTACACC27400.018.5470284
ACTGTGC24700.018.4578368
GTGTAAG17300.018.1267851
TATAGGG29050.017.6586572
CCCTATA36300.017.403042
GTGTAGG21350.017.1362511
GGACTGT14700.017.12196
CCAGGAC20600.017.0615543
ATACTGT32150.016.9867526
GTCTAGG15200.016.8800261
TATACAG27850.016.7106885
Produced by FastQC (version 0.11.2)