[2017-04-24 16:06:09,353] multiqc [DEBUG ] No MultiQC config found: /opt/local/tubo/env/python3/lib/python3.4/site-packages/multiqc_config.yaml [2017-04-24 16:06:09,353] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2017-04-24 16:06:09,354] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2017-04-24 16:06:09,354] multiqc [DEBUG ] Command used: /opt/local/tubo/env/python3/bin/multiqc /home/gencore/fastqc-delivery/C98KBACXX/1 [2017-04-24 16:06:10,434] multiqc [INFO ] This is MultiQC v1.0.dev0 [2017-04-24 16:06:10,434] multiqc [DEBUG ] Command : /opt/local/tubo/env/python3/bin/multiqc /home/gencore/fastqc-delivery/C98KBACXX/1 [2017-04-24 16:06:10,434] multiqc [DEBUG ] Working dir : /home/gencore/fastqc-delivery/C98KBACXX/1 [2017-04-24 16:06:10,435] multiqc [INFO ] Template : default [2017-04-24 16:06:10,435] multiqc [INFO ] Searching '/home/gencore/fastqc-delivery/C98KBACXX/1' [2017-04-24 16:06:10,435] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow, sortmerna [2017-04-24 16:06:10,436] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpy9icusgp [2017-04-24 16:06:15,950] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:15,982] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found [2017-04-24 16:06:16,009] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,016] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,027] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2017-04-24 16:06:16,049] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,066] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,072] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,149] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,155] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,166] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,183] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,204] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,220] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,238] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,244] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,362] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,368] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,384] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,431] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,446] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,462] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,471] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,486] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,517] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,589] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2017-04-24 16:06:16,597] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,604] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,620] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,634] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,649] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,667] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,697] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,703] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:16,999] multiqc.modules.fastqc.fastqc [INFO ] Found 9 reports [2017-04-24 16:06:17,115] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:17,129] multiqc.modules.sortmerna.sortmerna [DEBUG ] Could not find any SortMeRNA data in ('/home/gencore/fastqc-delivery/C98KBACXX/1',) [2017-04-24 16:06:17,147] multiqc [INFO ] Report : multiqc_report.html [2017-04-24 16:06:17,147] multiqc [INFO ] Data : multiqc_data [2017-04-24 16:06:17,147] multiqc [DEBUG ] Moving data file from '/tmp/tmpy9icusgp/multiqc_data/multiqc_general_stats.txt' to '/home/gencore/fastqc-delivery/C98KBACXX/1/multiqc_data' [2017-04-24 16:06:17,147] multiqc [DEBUG ] Moving data file from '/tmp/tmpy9icusgp/multiqc_data/multiqc_fastqc.txt' to '/home/gencore/fastqc-delivery/C98KBACXX/1/multiqc_data' [2017-04-24 16:06:17,147] multiqc [DEBUG ] Moving data file from '/tmp/tmpy9icusgp/multiqc_data/multiqc_sources.txt' to '/home/gencore/fastqc-delivery/C98KBACXX/1/multiqc_data' [2017-04-24 16:06:17,379] multiqc [INFO ] MultiQC complete