FastQCFastQC Report
Mon 6 Jun 2016
C8CR7ACXX_l08n01_mj-153-160531.35100000057c9c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8CR7ACXX_l08n01_mj-153-160531.35100000057c9c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7975284
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG11700.025.76919411
CGATCAG12600.022.85696833
ACACGTC13450.022.41632713
AGTCACG13300.021.99203728
GTCACGA13300.021.65396929
CACACGT14250.020.9999712
ACGTCTG14950.020.31769815
GATCGGA15050.020.1932051
CACGATC14700.020.05086731
CACGTCT15550.019.24434714
GATCTCG15550.018.66533539
GTATGCC17000.017.8680745
CGTCTGA17450.017.40685316
AGCACAC17800.017.06458310
GAGCACA19400.016.4687399
GAACTCC18500.016.41858721
CCAGTCA19350.015.2322526
CAGTCAC19900.014.81125927
CTCGTAT20450.014.63323142
TCCAGTC20200.014.59128925
Produced by FastQC (version 0.11.2)