FastQCFastQC Report
Mon 6 Jun 2016
C8CR7ACXX_l07n01_mj-50-160531.35100000057cb5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8CR7ACXX_l07n01_mj-50-160531.35100000057cb5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8437829
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG8650.017.16740211
CCGTACG9200.016.63001633
CGTACGT11850.013.67054334
GATCGGA11800.013.5423691
ACACGTC11650.013.13295113
CACACGT12250.012.48962912
ACGTCTG13400.011.92141215
CACGTCT13150.011.46372614
CGTCTGA14250.011.21031116
AGCACAC14550.010.97923610
GAGCACA16650.010.1359
CAGTCAC16450.09.7110627
GTACGTA16450.09.43745235
ACCGTAC17250.08.99977432
CTCGTAT18550.08.85506444
GAACTCC17350.08.81822221
CCAGTCA18800.08.73653326
GTCACCG17650.08.66838829
AGAGCAC18850.08.4746898
TCCAGTC18500.08.3917325
Produced by FastQC (version 0.11.2)