FastQCFastQC Report
Mon 6 Jun 2016
C8CR7ACXX_l07n01_mj-30dmc1-160531.35100000057975.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8CR7ACXX_l07n01_mj-30dmc1-160531.35100000057975.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14109412
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG21550.025.05776811
CACACGT25450.021.65991212
ACACGTC25450.021.30628213
CGATCTC24650.021.17604438
GATCGGA26550.020.6006161
ACGTCTG26800.020.40070715
CACGATC26950.019.53571536
CACGTCT28050.019.41144214
GATCTCG27600.018.83114239
AGCACAC30600.017.86747710
CGTCTGA31100.017.65237616
CATCACG31400.017.19704433
CAGTCAC32950.016.79778127
GAGCACA34000.016.2792579
GTCACAT34900.015.73028729
TCCAGTC35550.015.63254225
TCACGAT34950.015.51465435
GAACTCC36950.015.40558921
CGTATGC34950.015.38666544
CCAGTCA36350.015.22659926
Produced by FastQC (version 0.11.2)