FastQCFastQC Report
Mon 6 Jun 2016
C8CR7ACXX_l07n01_dw-sample-160531.35100000057e70.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8CR7ACXX_l07n01_dw-sample-160531.35100000057e70.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4615846
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG5550.014.59409611
CACGTCT6800.013.23484114
ACACGTC7300.012.02013813
AGCACAC7250.011.79295510
ACGTCTG7650.011.76430415
CACACGT7500.011.3996112
CAGTCAC8450.011.1830527
CGTCTGA8650.010.14416216
TATCTCG8000.010.12498341
GAACTCC9050.09.69580121
GATCGGA8300.09.4922541
GAGCACA9700.09.0462789
CCAGTCA9700.09.046082526
AGTCACA10250.08.99969228
TCCAGTC10000.08.77469925
GTCACAT10100.08.46505729
CTCGTAT10400.08.43803444
ATCTCGT10550.08.31788342
GTCTGAA12200.07.930056617
TCGTATG12100.07.81058145
Produced by FastQC (version 0.11.2)