FastQCFastQC Report
Mon 6 Jun 2016
C8CR7ACXX_l04n01_sb1.3510000005831b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8CR7ACXX_l04n01_sb1.3510000005831b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30368066
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC61500.023.19652244
GTATGCC63400.022.5373345
ACGTCTG74000.020.46198315
TCGTATG72800.019.68690543
ACACGTC78500.019.37562613
CACGATC70600.019.28140436
CTCGTAT74350.019.18639642
CACGTCT80350.018.9854914
CGATCTC74650.018.6271338
CGTCTGA82400.018.37605316
GCACACG83700.018.36041611
GATCTCG77350.017.97692739
ACGATCT76000.017.9706237
CACACGT86100.017.87458412
CAGTCAC81100.017.83875327
CCAGTCA86650.017.03369726
CATCACG82250.016.76882233
ACTCCAG91000.016.51579523
TCCAGTC94500.015.85648125
GAACTCC95600.015.8152421
Produced by FastQC (version 0.11.2)