FastQCFastQC Report
Tue 23 Aug 2016
C841RACXX_l08n02_tsr36.35200000067667.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC841RACXX_l08n02_tsr36.35200000067667.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6556732
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGCCC4750.036.013844-45
GAGGGGC13600.034.230349
GGGCGCC14400.030.35885842-43
TCGGGGG26150.026.34208938-39
AAGGGGC16500.026.1988059
GGGCGGG19450.026.01797712-13
GGGGCCC10200.025.85549744-45
GGGGCGC14550.024.82050942-43
AGGGGCG16850.024.81359910-11
GAGCGGC16600.023.7516639
GGGCCCG5750.021.899744-45
GTAGGGG13600.021.66047918-19
GGGGGGC31450.019.86850542-43
GCGCCCG6100.019.8641744-45
AGAGGGG29100.019.4254638
CGGGTAG9250.019.26399214-15
GATCGGG23050.019.1581521
GGGGCCG12800.018.93303744-45
GGGGGCG20700.018.36228240-41
GGGGCGG20650.018.29169810-11
Produced by FastQC (version 0.11.2)