FastQCFastQC Report
Tue 23 Aug 2016
C841RACXX_l08n02_tsr06.35200000067341.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC841RACXX_l08n02_tsr06.35200000067341.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11727106
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC24950.043.600899
AAGGGGC29850.036.9210559
TCGGGGG60900.033.11460538-39
GGCGCCC12750.032.7957844-45
GGGGCCC23550.030.9715544-45
AGGGGCG32700.030.5115410-11
GGGGCGC35200.028.21292742-43
GTAGGGG30000.028.03276418-19
GGGCGCC43650.027.81321342-43
GGGCGGG43850.027.4681712-13
GGGGCCG27500.027.12766544-45
GAGCGGC37850.027.10939
GATCGGG44950.025.8821221
GGGCCCG13900.025.63846244-45
AGAGCGG42050.023.8362338
CGGGGTG12350.023.46934314-15
TCCGGGG27300.023.2315338-39
CTCGGGG37000.023.17505536-37
GGGGGGC77400.023.05226142-43
CCGGGGG29850.022.36099838-39
Produced by FastQC (version 0.11.2)