C841RACXX_l06n02_total_drought_1h_rep2_shoot.352000000672d5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C841RACXX_l06n02_total_drought_1h_rep2_shoot.352000000672d5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59831212
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAG	102125	0.17068850285031834	No Hit
TGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT	96814	0.1618118650178773	No Hit
TCAAAAATTGCTATATGTTAGCAGAAAAGCCTTATCCATTAAGAGATGGA	94792	0.15843235801407465	No Hit
GCCGCGGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAG	92097	0.15392802004412012	No Hit
CTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGA	87799	0.14674447845047833	No Hit
GGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAA	86619	0.1447722636807023	No Hit
GCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCAT	78353	0.1309567320815764	No Hit
GCCGCTGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAG	73847	0.12342554585055038	No Hit
GCCGCCGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAG	72929	0.12189122961440259	No Hit
TGACCGAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT	67915	0.1135109882113035	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGCGGA	23010	52.973827	2
CGCGGAA	30390	51.802628	3
CGGAAGT	40765	51.094543	5
TTGCAGT	160035	47.28654	9
ATTGCAG	163840	46.15883	8
TGCTATA	93580	45.505264	9
CATACGC	31470	44.823395	9
GCGGAAG	44885	44.380623	4
GAAGTAG	229285	44.268505	7
ATTGCTA	98745	43.48631	7
AAGTAGG	236565	42.815647	8
AATCTGT	89865	42.544624	7
TCTGTAA	92670	41.2354	9
AGTAGGA	246830	41.122158	9
GCCGCGG	24940	40.305855	1
TTGCTAT	106595	40.171562	8
GGTGTGC	42635	40.09872	6
ATCTGTA	95420	40.076397	8
GGAAGTA	74890	38.045	6
TGACCGA	19930	37.619976	1