FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l08n02_tsr17.35200000055db8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l08n02_tsr17.35200000055db8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9290528
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC30300.052.343279
GATCGGG50300.039.308131
GAGCGGC36550.036.7668159
GGCGCCC14100.036.72649844-45
ATCGGGA56950.034.709552
GGGCGCC51050.034.15480842-43
GTAGGGG33750.032.0207718-19
CGGGAGA60100.030.9024244
GGGCGGG39200.029.86782612-13
AAGGGGC33000.029.4982979
TCGGGGG80400.029.13143538-39
CGGGTAG19050.028.67516914-15
TAGGGGA37750.028.62784418-19
AGAGCGG48700.028.5636568
TCGGGAG58750.028.3039053
GGGCCCG10100.027.51735344-45
AGGGTAG37950.027.09809328-29
GGGGCCC20750.026.55902144-45
GGGGCGC54300.026.51089142-43
GGGGGCG60250.025.74587440-41
Produced by FastQC (version 0.11.2)