FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l08n02_tsr11.35200000055d75.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l08n02_tsr11.35200000055d75.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12060480
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC33200.048.3458869
GATCGGG57550.036.8353731
GAGCGGC46400.034.7970059
TCGGGGG73200.034.13774538-39
AAGGGGC32850.033.826849
GGCGCCC13600.032.66105344-45
GTAGGGG37450.032.15479718-19
GGGCGCC55200.031.50011342-43
AGAGCGG52050.031.470768
GGGGCGC43800.030.58757842-43
CTCGGGG47950.030.45477736-37
ATCGGGA69750.030.2462772
TCGGGAG63350.029.6982783
AGGGGCG41050.029.56007410-11
GGGCGGG43950.029.50333812-13
AGGGTAG46850.027.67881228-29
GGGGCCC20700.027.19602844-45
CGGGTAG25650.027.03725414-15
GGGGGCG57250.026.55489340-41
CGGGAGA78050.026.3506534
Produced by FastQC (version 0.11.2)