FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l07n02_tsr34.35200000055e74.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l07n02_tsr34.35200000055e74.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13964138
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCGCC36000.034.71071642-43
GGCGCCC11750.033.1573144-45
GAGGGGC29900.030.9723749
GGGGCGC34500.030.16027642-43
TCGGGGG59400.030.11352538-39
GAGCGGC38600.027.8055979
GGGGCCC19050.027.1853444-45
AAGGGGC34400.026.0924269
GGGGGCG43750.025.1952540-41
GGGCGGG36600.025.17998512-13
GGGCCCG11500.024.99544144-45
AGGGGCG33200.024.39404110-11
GTAGGGG35000.023.95781918-19
GATCGGG59900.023.955371
CTCGGGG40500.023.21635436-37
GCGCCCG10800.022.21625744-45
CGGGTAG22550.020.96198314-15
ATCGGGA69150.020.6758422
TAGGGGA42400.020.33674218-19
CCGGGGG29500.019.88968838-39
Produced by FastQC (version 0.11.2)