FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l07n02_tsr07.35200000055d68.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l07n02_tsr07.35200000055d68.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14393528
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC35300.045.4741339
GATCGGG66600.039.5962521
AAGGGGC37200.038.810849
GGCGCCC19800.037.55344444-45
GAGCGGC52900.035.910949
TCGGGGG85400.035.88257238-39
GGGGCGC51700.034.69265742-43
GGGCGCC67750.032.54017342-43
ATCGGGA84200.031.3101252
AGGGGCG43800.031.2332410-11
GTAGGGG45700.030.9273518-19
GGGCGGG48700.030.8729512-13
AGAGCGG62500.030.3888918
CTCGGGG56500.029.54357736-37
TCGGGAG72900.029.188733
GGGCCCG15750.028.95951544-45
GGGGCCC27400.028.61106144-45
GGGGGCG70850.027.8639340-41
CGGGTAG30300.027.28119714-15
GCGCCCG20450.026.48574344-45
Produced by FastQC (version 0.11.2)