FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l07n02_tsr01.35200000055d25.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l07n02_tsr01.35200000055d25.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19093170
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC131250.072.874559
GATCGGG226550.070.4927441
GAGCGGC171050.069.9669959
AAGGGGC130100.069.61289
AGAGCGG187800.065.283188
ATCGGGA245550.064.6118552
TCGGGAG203950.062.8796923
CGGGAGA236900.059.174424
GAGAGCG185650.052.5312427
TCGGGGG468800.043.4455138-39
GGCGCCC100950.043.11134344-45
GGGAGAG424500.043.0849235
GAGAGGG267700.042.9219257
GGAGAGC237500.042.159186
GTAGGGG204450.041.87246318-19
GGGCGCC355650.041.84860242-43
AGGGGCG202800.041.3993710-11
GGGGCGC300250.041.1515842-43
GAACGGG88350.040.8739931
CTCGGGG274550.040.4657136-37
Produced by FastQC (version 0.11.2)