FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l03n02_salt_24h_rep2_shoot.35200000055bba.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l03n02_salt_24h_rep2_shoot.35200000055bba.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28233428
Sequences flagged as poor quality0
Sequence length101
%GC23

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGGGG853.1508207E-622.35508338-39
GGGGCGC1600.00948091910.392652542-43
CGGGGGG3802.695044E-47.500718638-39
Produced by FastQC (version 0.11.2)