FastQCFastQC Report
Thu 19 May 2016
C838DACXX_l01n02_drought_1h_rep2_root.35200000055c69.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC838DACXX_l01n02_drought_1h_rep2_root.35200000055c69.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212489
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACTC2100.00672759869.04797892-93
Produced by FastQC (version 0.11.2)