C8364ACXX_l07n01_envcontrol.34100000035d45.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C8364ACXX_l07n01_envcontrol.34100000035d45.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14045726
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCAGAACTCCAGTCACTGGTGAATCTCGTATGC	188906	1.344935818910322	TruSeq Adapter, Index 4 (97% over 35bp)
CGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGG	33192	0.23631387939647974	No Hit
CGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACT	29682	0.21132407110889107	No Hit
CTTTGTGTTTGAGAGGTGTTTTATGTTGATAAAGGAAAAAGGTGTTTAAA	24937	0.17754155249789155	No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	23149	0.16481170143857285	No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	21128	0.15042298276358232	No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA	17835	0.12697812843565365	No Hit
TGTTTGAGAGGTGTTTTATGTTGATAAAGGAAAAAGGTGTTTAAAGGACG	16628	0.11838476701026349	No Hit
GTGTTTGAGAGGTGTTTTATGTTGATAAAGGAAAAAGGTGTTTAAAGGAC	16363	0.11649807208256803	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTTTGTG	124115	40.132633	1
GTATCAG	8410	40.0595	3
ATCAGCT	9295	36.57556	5
TTTGTGT	137840	36.16225	2
CGTATGC	31065	35.120136	44-45
TTGTGTT	145500	35.038982	3
CTCGTAT	31035	34.48699	42-43
TATGCCG	31950	34.19265	46-47
TCGTATG	31280	34.034668	42-43
GTATGCC	31425	33.735367	44-45
CGGTATC	10275	33.349693	1
TGTGTTT	154005	33.236614	4
CCGTCTT	33155	32.82764	50-51
GCCGTCT	32165	32.79616	48-49
GCTTGAA	29740	32.452003	58-59
GGTATCA	10620	31.857431	2
TCTTCTG	33005	31.740458	52-53
ATGCCGT	33260	31.517801	46-47
GCAAGAG	9705	31.361107	7
GCTCACT	10855	31.275562	9