FastQCFastQC Report
Thu 15 Oct 2015
C8364ACXX_l06n01_30427.34100000035d1e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8364ACXX_l06n01_30427.34100000035d1e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22740931
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACTTT238350.065.086121
AACTTTG248500.062.8664782
ACTTTGT490600.046.2623751
CTTTGTG932950.041.7516251
TTTGTGT996500.039.14292
TCCGATC17300.034.0353137
TTGTGTT1324950.030.7846953
TGTGTTT1355550.030.233524
GTGTTTG1523300.026.9920275
TGTTTGA1729450.023.6895246
GTTTGAG975400.023.5135697
TTTGAGG382300.023.1275468
TTGAGGG218100.019.2250219
GTTTGAC366900.018.4425667
TTGAGGT127500.017.3182729
TTTGAGC323600.017.0364028
TTTGACC111700.016.3242118
TTTGATG194200.016.2602278
TTGAGGC88600.015.6498769
AACTTGT50750.015.5459722
Produced by FastQC (version 0.11.2)