FastQCFastQC Report
Thu 15 Oct 2015
C8364ACXX_l05n01_30427.34100000035d1e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8364ACXX_l05n01_30427.34100000035d1e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22972646
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACTTT242500.064.506771
AACTTTG255900.061.3970572
ACTTTGT495600.045.586441
CTTTGTG933350.041.3078421
TCCGATC17900.038.993157
TTTGTGT997950.038.7374232
TTGTGTT1323300.030.5002083
TGTGTTT1361500.029.7597474
GTGTTTG1533400.026.5306555
TGTTTGA1736800.023.3251826
GTTTGAG977150.023.042227
TTTGAGG385000.022.2977838
TTGAGGG226900.018.1012449
GTTTGAC367700.018.0783337
TTTGAGC324200.016.901178
TTGAGGT126500.016.477869
TTTGATG201850.016.1839188
TTTGAGT418400.015.5926188
TTTGACC111250.015.3647848
TTGAGGC89750.015.3422969
Produced by FastQC (version 0.11.2)