FastQCFastQC Report
Thu 15 Oct 2015
C8364ACXX_l04n01_6929.34100000035b97.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8364ACXX_l04n01_6929.34100000035b97.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15584665
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTGTG731300.067.102651
TTTGTGT801150.061.3124432
TTGTGTT914050.055.151913
TGTGTTT1013450.050.0058254
ACTTTGT227150.049.6456571
GTGTTTG1098600.046.0641675
GTTTGAG895950.034.1021042
TGTTTGA1764100.033.571451
TTTGAGG333950.030.2713958
AACTTTG111800.029.4895422
TTTGAGT398750.028.5442893
TAACTTT116000.028.3751181
TTGAGGG180100.027.0502879
TTTGAGC276300.023.9683253
GTTTGAC419300.023.0888652
TTGAGTC163250.022.8513764
GTTTGAA221850.022.7640842
GTTTGAT635050.022.627012
TTGAGGC84100.021.9805974
GAGTGGG32900.019.6282356
Produced by FastQC (version 0.11.2)